So I ran the Schloss SOP, now I want to retrieve the actual sequence(s) for individual OTUs for further analysis. For instance, I know I want OTU 1 , but which how do I find it/ retrieve it from in the final.fasta?
You might be interested in one of these:
http://www.mothur.org/wiki/Get.oturep
http://www.mothur.org/wiki/Bin.seqs
bin.seqs ! Thank you! I forgot about that one 