I tried the command remove.groups as follows: remove.groups(fasta=final.fasta, taxonomy=final.taxonomy, count=final.count_table, groups=TAR). However, when i opened the final fasta file and count file and i can still find 266 sequences that belong to sample “TAR”. I have 10 samples total, but the “TAR” sample i do not need to analyze at this stage. I have roughly ~30,000 per sample.
I am running this mothur version:
Running 64Bit Version
Last updated: 1/6/2014