Relative abundance visualization


I’ve finished the mothur SOP until the step of OTUs and got the result files called: final.opti_mcc.0.03.subsample.shared and final.opti_mcc.0.03.cons.taxonomy. I want to use these two files to plot relative abundance at phylum level and genus level. However, I am confused of how to merge these two files to do the following steps. Are there any tutorials of using these results to generate relative abundance plot?


Be sure to check out my minimalR materials, especially Lesson 9…


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