Relative abundance visualization

Integrating mothur with other programs
1

Hi,

I’ve finished the mothur SOP until the step of OTUs and got the result files called: final.opti_mcc.0.03.subsample.shared and final.opti_mcc.0.03.cons.taxonomy. I want to use these two files to plot relative abundance at phylum level and genus level. However, I am confused of how to merge these two files to do the following steps. Are there any tutorials of using these results to generate relative abundance plot?

Thanks

2

Be sure to check out my minimalR materials, especially Lesson 9…

Thanks
Pat

3

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