Microbial abundance/diversity

Hi All,
Can anybody please direct me how I may get the relative abundance for my data sets? I am interested in generating abundance data at both the phyla and the order level. I have generated and classified my OTUs, but can’t seem to find my way from there.
Thanks a lot!

You can use get.relabund from the shared file

Thank you very much, Prof. Schloss.

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