I’m having trouble with read.tree
I had v. 1.9 installed and had this trouble:
read.tree(tree=Ss031a01_ExportTrees, group=Ss031a01_combined.group)
Name: Bsubtilis is not in your groupfile, and will be disregarded.
[x-160-94-81-118:25808] *** Process received signal ***
[x-160-94-81-118:25808] Signal: Segmentation fault (11)
[x-160-94-81-118:25808] Signal code: Address not mapped (1)
[x-160-94-81-118:25808] Failing at address: 0x20
[x-160-94-81-118:25808] [ 0] 2 libSystem.B.dylib 0x00007fff819a480a _sigtramp + 26
[x-160-94-81-118:25808] [ 1] 3 ??? 0x0000000100745768 0x0 + 4302591848
[x-160-94-81-118:25808] [ 2] 4 mothur 0x00000001001a5733 _ZN4Tree11mergeGroupsEi + 2115
[x-160-94-81-118:25808] [ 3] 5 mothur 0x00000001001a607d _ZN4Tree12assembleTreeEv + 157
[x-160-94-81-118:25808] [ 4] 6 mothur 0x00000001002a89d8 _ZN15ReadTreeCommand7executeEv + 280
[x-160-94-81-118:25808] [ 5] 7 mothur 0x0000000100215955 _ZN14InteractEngine8getInputEv + 1077
[x-160-94-81-118:25808] [ 6] 8 mothur 0x0000000100239039 main + 2025
[x-160-94-81-118:25808] [ 7] 9 mothur 0x0000000100005478 start + 52
[x-160-94-81-118:25808] [ 8] 10 ??? 0x0000000000000001 0x0 + 1
[x-160-94-81-118:25808] *** End of error message ***
Segmentation fault
Then I saw that v. 1.10 is out, so tried that:
mothur > read.tree(tree=Ss031a01_ExportTrees, group=Ss031a01_combined.group)
Name: Bsubtilis is not in your groupfile, and will be disregarded.
Bus error
In both cases mothur crashes. Any ideas?