I am analyzing 454 sequences and I have ~ 5000 sequences in 12 groups. I followed the analysis described for the Sogin dataset.
mothur > read.otu(list=Atacama.unique.pick.filter.fn.list, group=Atacama.pick.groups, label=unique-0.03-0.05-0.10)
I get the following message:
Your group file contains 39300 sequences and list file contains 35460 sequences. Please correct.
For a list of names that are in your group file and not in your list file, please refer to Atacama.unique.pick.filter.fn.missing.name.
The Atacama.unique.pick.filter.fn.missing.name does not contain any name (see attached) and I this point I do not know what to do.