No option for count file in classify.tree


I’m trying to make a tree file with clearcut and there is no option to group my sequences except with a group or a name file, which, to my understanding, have been replaced with count files. Is there a way to get a count file in classify.tree to specify what sequences belong to which group?


Hi there,

For clearcut, the only file you can give it is a phylip-formatted distance matrix. For things like phylo diversity and the unifracs, you can provide a count file along with the tree file and design to indicate what sequences go with what samples/groupings


This topic was automatically closed 10 days after the last reply. New replies are no longer allowed.