name file after trim.seqs and unique.seqs

Hi Pat&Team,
I’ve been merging some fasta and name files, but then I had problems to go on with the Schloss SOP.

Then I realized that after trim.seqs and unique.seqs, the name files have the same “name”, I mean there is overwriting and maybe it shouldn’t. At least it caused trouble to me.

What I’m trying to say is that the output for names file after trim.seqs and unique.seqs should be called differently.

Cheers,