I’m trying to make a shared file and keep running into this
[ERROR]: F4Q4SKU06G006T is in your listfile and not in your groupfile. Please correct. (150,000 times)
But when I use grep to search for a few of the missing sequences in the group file, I find them. This is a huge dataset with sequences from many runs so it’s completely possible that I inadvertently introduced a weird character when concatenating, but I haven’t been able to find it. Ideas on where to start looking?