how do I use these adapter sequences in my oligofile?
I have MiSeq fastq files R1 and R2 and want to make.contigs
and remove the adapter sequences, without loosing nearly
all the sequences to ‘scrap.contigs’.
Left of insert: AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
Right of insert: AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCGTCTTCTGCTTG
Thanks for help.