Hello Mothur team,
I am working on MiSeq paired end data with version mothur v.1.41.3. on linux.
The problem i am facing with making contigs
mothur "#make.contigs(file=$RAWDATA_FOLDER/MiSeq_16S.files, inputdir=$RAWDATA_FOLDER,outputdir=$ANALYSIS_FOLDER/mothur_output/,processors=8)"
These are few lines of system warning messages…
[WARNING]: reading expected a name with @ as a leading character, ignoring read.
[WARNING]: reading ����3W� expected a name with + as a leading character, ignoring.[WARNING]: names do not match. read for fasta and ����3W� for quality, ignoring.[WARNING]:
After this i ran make.contigs on uncompressed fastq file and it worked fine. I am wondering what could be the possible reason of having this error since gz issue was resolved in previous mothur versions.
Thanks in advance