Make.contigs not running to completion

[natalijav]

No error comes up but after trying a couple of times the command eventually runs til

Done.

It took 2219 secs to assemble 437576 reads.

And then the cursor is flickers below with no - mothur > - and no group count

I have a stability.trim/scrap.contigs FASTA file, a COUNT_TABLE file, a CONTIGS_REPORT file.

When I try and exist mothur, re-enter and run summary.seqs I get the following error

[ERROR]: ‘M06207_22_000000000-DGY8C_1_1101_27285_10509’ is not in your name or count file, please correct.

How can I get make.contigs run to completion?

[pschloss]

It could have been writing to disk still when you killed the process. Can you try letting it run longer? These functions aren’t instantaneous

Pat

[natalijav]

Hi Pat,

I think that might be the case. Seems I was a bit too eager… then I noticed you were using 16 processors, not quite the specs I’m dealing with

Thanks!

Natalija