my accnos file has 1304 entries. Using get.seqs, this results in 1208 sequences. How is this possible? (not restricted to this example)

I’ve created the accnos fille manually, selecting several outputs from chimera commands, and retaining unique positives. Is it possible that mothur skips some entries because they are not in the same order as in the fasta file?

edit: Using the original accnos (no combination) indeed extracts all sequences.

Could you send your fasta, combined accnos and original accnos to

problem was the fasta file. Sorry for this!