get.communitytype() bugs when using several processors

[bberger]

Dear Pat and Sarah,
At the end of this discussion, I reported what looks like a bug.

get.communitytype

Hi, I have a question about get.communitytype (or what used to be called get.metacommunity). As I understand it, this is used to see if community composition from different samples cluster together or not, and if so, what is the optimum number of clusters. So this can be used to determine for instance, gut enterotypes (albeit slightly different method to the one used by Arumugam et al). Is this correct? Anyway, assuming this is correct, I ran the command, and on the screen (and in .fit file),…

I hope this can help.
Kindest regards,
Bernard

[westcott]

Thanks for reporting this. I will look into it.