flip broken

mothur bugs
1

Hello
When a flip is included in trim.seqs it is always set as true regardless of input.
The only way to prohibit flip is to not include it as a command
example flip true
mothur > trim.seqs(fasta=GQY1XT001.fasta, oligos=GQY1XT001.oligos, qfile=GQY1XT001.qual, maxambig=0, maxhomop=8, flip=T, bdiffs=1, pdiffs=2, qwindowaverage=35, qwindowsize=50, processors=2)
mothur > trim.seqs(fasta=GQY1XT001.fasta, oligos=GQY1XT001.oligos, qfile=GQY1XT001.qual, maxambig=0, maxhomop=8, flip=F, bdiffs=1, pdiffs=2, qwindowaverage=35, qwindowsize=50, processors=2)
example flip false
mothur > trim.seqs(fasta=GQY1XT001.fasta, oligos=GQY1XT001.oligos, qfile=GQY1XT001.qual, maxambig=0, maxhomop=8, bdiffs=1, pdiffs=2, qwindowaverage=35, qwindowsize=50, processors=2)

2

Thanks for bringing this to our attention. It will be fixed in version 1.23.0.