Dual dendrograms

As I can see, there is no function in Mothur to make dual dendrogram (as published in http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154475/). Which software would be the best to replace Mothur for this application ?
Thank you (and thanks for previous replies too),

I’m pretty sure the dual dendrograms with heat map were made using one of the heat map functions in R.