Dear mothur creators,
thank you for your great program.
I wanted to ask if it would be able to add some “real” denoising command into mothur? It is partially because I am a bit interested in 100%ID OTUs and I am not sure if such analysis in mothur makes sense so far.
To be more particular, I had IPED on my mind, also because it is already based on mothur. Or at least, in this particular case, would it be possible for make.contigs to produce at least IPED compatible quality file?
However, I am not an expert on which denoising method works best, so I am open to other possibilities as well