After running an alignment on my sequences and then the screen seqs command I noticed I lost 30% of my total sequences. I would like to find out the number of sequences per sample after the screen seqs command so I can compare to the amount per sample before the cut. I have 80 alumina samples so downloading my last count table and putting it in excel will not work as there are too many sequences for excel to handle and it cuts off a large number of sequences. Is there a command similar to summary but will output the amount per sample instead of the total number?
Thanks in advance!