Mapping removed sequences back to sample after screen.seqs

I am currently trying to determine the proportion of sequences per sample that were removed from my dataset after the screen.seqs command.

Anyone know how to accomplish this!


You can use the count.groups command, to find the number of sequence in each sample before and after the screening. The *.count.summary file is a 2 column tab delimited file that could be easily opened in excel and used to find the percentage of sequences removed in each sample.

Thanks for the reply!!!