I am going through the miseq pipeline.
I have ran the uchime outside mothur environemt and have generated the count_table.
I have used the following command
classify.seqs(fasta=ms96.uchime.non.fasta,count=ms96.uchime.non.count_table,reference=silva.bacteria.fasta, taxonomy=silva.bacteria.silva.tax,cutoff=80)
Unable to open /eva/users/djf482/Projects/MS96/raw_data/ms96.uchime.non.fasta. Trying output directory /eva/users/djf482/Projects/MS96/output/ms96.uchime.non.fasta
Unable to open /eva/users/djf482/Projects/MS96/raw_data/ms96.uchime.non.count_table. Trying output directory /eva/users/djf482/Projects/MS96/output/ms96.uchime.non.count_table
and the output is erroruous !
I appreciate your commend
Using 64 processors.
Reading template taxonomy… DONE.
Reading template probabilities… *** glibc detected *** ./mothur: free(): invalid next size (normal): 0x000000001c8136c0 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x78b66)[0x7f7f175d0b66]
/usr/lib64/libstdc++.so.6(_ZNSs6assignERKSs+0x86)[0x7f7f180f0ea6]
./mothur(_ZN8Bayesian12readProbFileERSt14basic_ifstreamIcSt11char_traitsIcEES4_SsSs+0xb20)[0x9173e0]
./mothur(_ZN8BayesianC1ESsSsSsiiiibb+0x1357)[0x919217]
./mothur(_ZN19ClassifySeqsCommand7executeEv+0x4d6)[0x6fd956]
./mothur(_ZN11BatchEngine8getInputEv+0x8f5)[0x976415]
./mothur(main+0xcca)[0x4e98ca]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f7f17579455]
./mothur[0x4ea811]
======= Memory map: ========
00400000-0115f000 r-xp 00000000 00:24 15450 /eva/users/djf482/Projects/MS96/raw_data/mothur
0135f000-01360000 r–p 00d5f000 00:24 15450 /eva/users/djf482/Projects/MS96/raw_data/mothur
01360000-01362000 rw-p 00d60000 00:24 15450 /eva/users/djf482/Projects/MS96/raw_data/mothur
01362000-01365000 rw-p 00000000 00:00 0
022b8000-1c832000 rw-p 00000000 00:00 0 [heap]
7f7f12000000-7f7f12037000 r-xp 00000000 08:02 2232176 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_io_romio.so
7f7f12037000-7f7f12237000 —p 00037000 08:02 2232176 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_io_romio.so
7f7f12237000-7f7f12238000 r–p 00037000 08:02 2232176 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_io_romio.so
7f7f12238000-7f7f1223a000 rw-p 00038000 08:02 2232176 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_io_romio.so
7f7f12240000-7f7f1224c000 r-xp 00000000 08:02 2232202 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_rdma.so
7f7f1224c000-7f7f1244c000 —p 0000c000 08:02 2232202 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_rdma.so
7f7f1244c000-7f7f1244d000 r–p 0000c000 08:02 2232202 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_rdma.so
7f7f1244d000-7f7f1244e000 rw-p 0000d000 08:02 2232202 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_rdma.so
7f7f12450000-7f7f1245a000 r-xp 00000000 08:02 2232200 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
7f7f1245a000-7f7f12659000 —p 0000a000 08:02 2232200 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
7f7f12659000-7f7f1265a000 r–p 00009000 08:02 2232200 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
7f7f1265a000-7f7f1265b000 rw-p 0000a000 08:02 2232200 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
7f7f12660000-7f7f12679000 r-xp 00000000 08:02 2232142 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
7f7f12679000-7f7f12878000 —p 00019000 08:02 2232142 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
7f7f12878000-7f7f12879000 r–p 00018000 08:02 2232142 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
7f7f12879000-7f7f1287a000 rw-p 00019000 08:02 2232142 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
7f7f12880000-7f7f12883000 r-xp 00000000 08:02 2232140 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sync.so
7f7f12883000-7f7f12a82000 —p 00003000 08:02 2232140 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sync.so
7f7f12a82000-7f7f12a83000 r–p 00002000 08:02 2232140 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sync.so
7f7f12a83000-7f7f12a84000 rw-p 00003000 08:02 2232140 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sync.so
7f7f12c90000-7f7f12c92000 r-xp 00000000 08:02 2232136 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
7f7f12c92000-7f7f12e91000 —p 00002000 08:02 2232136 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
7f7f12e91000-7f7f12e92000 r–p 00001000 08:02 2232136 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
7f7f12e92000-7f7f12e93000 rw-p 00002000 08:02 2232136 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
7f7f12e98000-7f7f12e9b000 r-xp 00000000 08:02 2232134 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_inter.so
7f7f12e9b000-7f7f1309a000 —p 00003000 08:02 2232134 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_inter.so
7f7f1309a000-7f7f1309b000 r–p 00002000 08:02 2232134 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_inter.so
7f7f1309b000-7f7f1309c000 rw-p 00003000 08:02 2232134 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_inter.so
7f7f130a0000-7f7f130a8000 r-xp 00000000 08:02 2232130 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
7f7f130a8000-7f7f132a7000 —p 00008000 08:02 2232130 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
7f7f132a7000-7f7f132a8000 r–p 00007000 08:02 2232130 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
7f7f132a8000-7f7f132a9000 rw-p 00008000 08:02 2232130 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
7f7f132b0000-7f7f132bb000 r-xp 00000000 08:02 2232124 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
7f7f132bb000-7f7f134bb000 —p 0000b000 08:02 2232124 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
7f7f134bb000-7f7f134bc000 r–p 0000b000 08:02 2232124 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
7f7f134bc000-7f7f134bd000 rw-p 0000c000 08:02 2232124 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
7f7f134bd000-7f7f1353d000 rw-p 00000000 00:00 0
7f7f13540000-7f7f13546000 r-xp 00000000 08:02 2232122 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
7f7f13546000-7f7f13745000 —p 00006000 08:02 2232122 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
7f7f13745000-7f7f13746000 r–p 00005000 08:02 2232122 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
7f7f13746000-7f7f13747000 rw-p 00006000 08:02 2232122 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
7f7f13748000-7f7f1374b000 r-xp 00000000 08:02 2232120 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
7f7f1374b000-7f7f1394a000 —p 00003000 08:02 2232120 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
7f7f1394a000-7f7f1394b000 r–p 00002000 08:02 2232120 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
7f7f1394b000-7f7f1394c000 rw-p 00003000 08:02 2232120 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
7f7f13950000-7f7f13954000 r-xp 00000000 08:02 2232118 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
7f7f13954000-7f7f13b53000 —p 00004000 08:02 2232118 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
7f7f13b53000-7f7f13b54000 r–p 00003000 08:02 2232118 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
7f7f13b54000-7f7f13b55000 rw-p 00004000 08:02 2232118 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
7f7f13d60000-7f7f13d73000 r-xp 00000000 08:02 2232218 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
7f7f13d73000-7f7f13f73000 —p 00013000 08:02 2232218 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
7f7f13f73000-7f7f13f74000 r–p 00013000 08:02 2232218 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
7f7f13f74000-7f7f13f75000 rw-p 00014000 08:02 2232218 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
7f7f13f88000-7f7f13f8d000 r-xp 00000000 08:02 2232150 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_dpm_orte.so
7f7f13f8d000-7f7f1418c000 —p 00005000 08:02 2232150 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_dpm_orte.so
7f7f1418c000-7f7f1418d000 r–p 00004000 08:02 2232150 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_dpm_orte.so
7f7f1418d000-7f7f1418e000 rw-p 00005000 08:02 2232150 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_dpm_orte.so
7f7f1418f000-7f7f14190000 rw-p 00000000 00:00 0
7f7f14190000-7f7f14195000 r-xp 00000000 08:02 2232132 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_hierarch.so
7f7f14195000-7f7f14395000 —p 00005000 08:02 2232132 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_hierarch.so
7f7f14395000-7f7f14396000 r–p 00005000 08:02 2232132 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_hierarch.so
7f7f14396000-7f7f14397000 rw-p 00006000 08:02 2232132 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_hierarch.so
7f7f143b0000-7f7f143b3000 r-xp 00000000 08:02 2232224 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pubsub_orte.so
7f7f143b3000-7f7f145b2000 —p 00003000 08:02 2232224 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pubsub_orte.so
7f7f145b2000-7f7f145b3000 r–p 00002000 08:02 2232224 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pubsub_orte.so
7f7f145b3000-7f7f145b4000 rw-p 00003000 08:02 2232224 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pubsub_orte.so
7f7f145b8000-7f7f145ba000 r-xp 00000000 08:02 2099370 /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.2.0.0
7f7f145ba000-7f7f147ba000 —p 00002000 08:02 2099370 /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.2.0.0
7f7f147ba000-7f7f147bb000 r–p 00002000 08:02 2099370 /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.2.0.0
7f7f147bb000-7f7f147bc000 rw-p 00003000 08:02 2099370 /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.2.0.0
7f7f147c0000-7f7f147c2000 r-xp 00000000 08:02 2232190 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
7f7f147c2000-7f7f149c1000 —p 00002000 08:02 2232190 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
7f7f149c1000-7f7f149c2000 r–p 00001000 08:02 2232190 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
7f7f149c2000-7f7f149c3000 rw-p 00002000 08:02 2232190 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
7f7f149c8000-7f7f149cb000 r-xp 00000000 08:02 2232188 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
7f7f149cb000-7f7f14bca000 —p 00003000 08:02 2232188 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
7f7f14bca000-7f7f14bcb000 r–p 00002000 08:02 2232188 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
7f7f14bcb000-7f7f14bcc000 rw-p 00003000 08:02 2232188 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
7f7f14bd0000-7f7f14bd1000 r-xp 00000000 08:02 2232186 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_fake.so
7f7f14bd1000-7f7f14dd0000 —p 00001000 08:02 2232186 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_fake.so
7f7f14dd0000-7f7f14dd1000 r–p 00000000 08:02 2232186 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_fake.so
7f7f14dd1000-7f7f14dd2000 rw-p 00001000 08:02 2232186 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_fake.so
7f7f14dd8000-7f7f14ddb000 r-xp 00000000 08:02 2232232 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
7f7f14ddb000-7f7f14fda000 —p 00003000 08:02 2232232 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
7f7f14fda000-7f7f14fdb000 r–p 00002000 08:02 2232232 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
7f7f14fdb000-7f7f14fdc000 rw-p 00003000 08:02 2232232 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
7f7f14fe0000-7f7f14fe2000 r-xp 00000000 08:02 2232116 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
7f7f14fe2000-7f7f151e1000 —p 00002000 08:02 2232116 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
7f7f151e1000-7f7f151e2000 r–p 00001000 08:02 2232116 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
7f7f151e2000-7f7f151e3000 rw-p 00002000 08:02 2232116 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
7f7f151e8000-7f7f151ea000 r-xp 00000000 08:02 2232114 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
7f7f151ea000-7f7f153e9000 —p 00002000 08:02 2232114 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
7f7f153e9000-7f7f153ea000 r–p 00001000 08:02 2232114 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
7f7f153ea000-7f7f153eb000 rw-p 00002000 08:02 2232114 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
7f7f153f0000-7f7f153f3000 r-xp 00000000 08:02 11665725 /opt/pbis/lib64/libuuid.so.0.0.0
7f7f153f3000-7f7f154f2000 —p 00003000 08:02 11665725 /opt/pbis/lib64/libuuid.so.0.0.0
7f7f154f2000-7f7f154f3000 rw-p 00002000 08:02 11665725 /opt/pbis/lib64/libuuid.so.0.0.0
7f7f154f8000-7f7f15585000 r-xp 00000000 08:02 11665669 /opt/pbis/lib64/liblwbase_nothr.so.0.0.0
7f7f15585000-7f7f15684000 —p 0008d000 08:02 11665669 /opt/pbis/lib64/liblwbase_nothr.so.0.0.0
7f7f15684000-7f7f156b2000 rw-p 0008c000 08:02 11665669 /opt/pbis/lib64/liblwbase_nothr.so.0.0.0
7f7f156b8000-7f7f156bf000 r-xp 00000000 08:02 4849702 /lib64/librt-2.15.so
7f7f156bf000-7f7f158be000 —p 00007000 08:02 4849702 /lib64/librt-2.15.so
7f7f158be000-7f7f158bf000 r–p 00006000 08:02 4849702 /lib64/librt-2.15.so
7f7f158bf000-7f7f158c0000 rw-p 00007000 08:02 4849702 /lib64/librt-2.15.so
7f7f158c0000-7f7f158e6000 r-xp 00000000 08:02 11665649 /opt/pbis/lib64/liblsacommon.so.0.0.0
7f7f158e6000-7f7f159e6000 —p 00026000 08:02 11665649 /opt/pbis/lib64/liblsacommon.so.0.0.0
7f7f159e6000-7f7f159f2000 rw-p 00026000 08:02 11665649 /opt/pbis/lib64/liblsacommon.so.0.0.0
7f7f159f8000-7f7f15a21000 r-xp 00000000 08:02 11665663 /opt/pbis/lib64/liblwadvapi_nothr.so.0.0.0
7f7f15a21000-7f7f15b20000 —p 00029000 08:02 11665663 /opt/pbis/lib64/liblwadvapi_nothr.so.0.0.0
7f7f15b20000-7f7f15b29000 rw-p 00028000 08:02 11665663 /opt/pbis/lib64/liblwadvapi_nothr.so.0.0.0
7f7f15b30000-7f7f15b50000 r-xp 00000000 08:02 11665683 /opt/pbis/lib64/liblwmsg_nothr.so.0.0.0
7f7f15b50000-7f7f15c4f000 —p 00020000 08:02 11665683 /opt/pbis/lib64/liblwmsg_nothr.so.0.0.0
7f7f15c4f000-7f7f15c52000 rw-p 0001f000 08:02 11665683 /opt/pbis/lib64/liblwmsg_nothr.so.0.0.0
7f7f15c58000-7f7f15c5b000 r-xp 00000000 08:02 11665641 /opt/pbis/lib64/liblsaauth.so.0.0.0
7f7f15c5b000-7f7f15d5b000 —p 00003000 08:02 11665641 /opt/pbis/lib64/liblsaauth.so.0.0.0
7f7f15d5b000-7f7f15d5c000 rw-p 00003000 08:02 11665641 /opt/pbis/lib64/liblsaauth.so.0.0.0
7f7f15d60000-7f7f15d7a000 r-xp 00000000 08:02 11665643 /opt/pbis/lib64/liblsaclient.so.0.0.0
7f7f15d7a000-7f7f15e7a000 —p 0001a000 08:02 11665643 /opt/pbis/lib64/liblsaclient.so.0.0.0
7f7f15e7a000-7f7f15e7b000 rw-p 0001a000 08:02 11665643 /opt/pbis/lib64/liblsaclient.so.0.0.0
7f7f15e80000-7f7f15e8c000 r-xp 00000000 08:02 4849690 /lib64/libnss_files-2.15.so
7f7f15e8c000-7f7f1608b000 —p 0000c000 08:02 4849690 /lib64/libnss_files-2.15.so
7f7f1608b000-7f7f1608c000 r–p 0000b000 08:02 4849690 /lib64/libnss_files-2.15.so
7f7f1608c000-7f7f1608d000 rw-p 0000c000 08:02 4849690 /lib64/libnss_files-2.15.so
7f7f16090000-7f7f1609a000 r-xp 00000000 08:02 4849694 /lib64/libnss_nis-2.15.so
7f7f1609a000-7f7f1629a000 —p 0000a000 08:02 4849694 /lib64/libnss_nis-2.15.so
7f7f1629a000-7f7f1629b000 r–p 0000a000 08:02 4849694 /lib64/libnss_nis-2.15.so
7f7f1629b000-7f7f1629c000 rw-p 0000b000 08:02 4849694 /lib64/libnss_nis-2.15.so
7f7f162a0000-7f7f162a7000 r-xp 00000000 08:02 4849684 /lib64/libnss_compat-2.15.so
7f7f162a7000-7f7f164a6000 —p 00007000 08:02 4849684 /lib64/libnss_compat-2.15.so
7f7f164a6000-7f7f164a7000 r–p 00006000 08:02 4849684 /lib64/libnss_compat-2.15.so
7f7f164a7000-7f7f164a8000 rw-p 00007000 08:02 4849684 /lib64/libnss_compat-2.15.so
7f7f164c0000-7f7f164c4000 r-xp 00000000 08:02 2232170 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_grpcomm_bad.so
7f7f164c4000-7f7f166c3000 —p 00004000 08:02 2232170 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_grpcomm_bad.so
7f7f166c3000-7f7f166c4000 r–p 00003000 08:02 2232170 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_grpcomm_bad.so
7f7f166c4000-7f7f166c5000 rw-p 00004000 08:02 2232170 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_grpcomm_bad.so
7f7f166c8000-7f7f166d6000 r-xp 00000000 08:02 2232198 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
7f7f166d6000-7f7f168d6000 —p 0000e000 08:02 2232198 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
7f7f168d6000-7f7f168d7000 r–p 0000e000 08:02 2232198 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
7f7f168d7000-7f7f168d8000 rw-p 0000f000 08:02 2232198 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
7f7f168d8000-7f7f168db000 r-xp 00000000 08:02 2232158 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ess_singleton.so
7f7f168db000-7f7f16ada000 —p 00003000 08:02 2232158 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ess_singleton.so
7f7f16ada000-7f7f16adb000 r–p 00002000 08:02 2232158 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ess_singleton.so
7f7f16adb000-7f7f16adc000 rw-p 00003000 08:02 2232158 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ess_singleton.so
7f7f16ae0000-7f7f16ae3000 r-xp 00000000 08:02 2232252 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_routed_binomial.so
7f7f16ae3000-7f7f16ce3000 —p 00003000 08:02 2232252 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_routed_binomial.so
7f7f16ce3000-7f7f16ce4000 r–p 00003000 08:02 2232252 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_routed_binomial.so
7f7f16ce4000-7f7f16ce5000 rw-p 00004000 08:02 2232252 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_routed_binomial.so
7f7f16ce8000-7f7f16ced000 r-xp 00000000 08:02 2232250 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
7f7f16ced000-7f7f16eec000 —p 00005000 08:02 2232250 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
7f7f16eec000-7f7f16eed000 r–p 00004000 08:02 2232250 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
7f7f16eed000-7f7f16eee000 rw-p 00005000 08:02 2232250 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
7f7f16ef0000-7f7f16ef1000 r-xp 00000000 08:02 2232126 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_carto_auto_detect.so
7f7f16ef1000-7f7f170f1000 —p 00001000 08:02 2232126 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_carto_auto_detect.so
7f7f170f1000-7f7f170f2000 r–p 00001000 08:02 2232126 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_carto_auto_detect.so
7f7f170f2000-7f7f170f3000 rw-p 00002000 08:02 2232126 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_carto_auto_detect.so
7f7f170f8000-7f7f17119000 r-xp 00000000 08:02 2232204 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_hwloc.so
7f7f17119000-7f7f17318000 —p 00021000 08:02 2232204 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_hwloc.so
7f7f17318000-7f7f17319000 r–p 00020000 08:02 2232204 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_hwloc.so
7f7f17319000-7f7f1731a000 rw-p 00021000 08:02 2232204 /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_hwloc.so
7f7f17320000-7f7f17349000 r-xp 00000000 08:02 4849730 /lib64/libtinfo.so.5.9
7f7f17349000-7f7f17548000 —p 00029000 08:02 4849730 /lib64/libtinfo.so.5.9
7f7f17548000-7f7f1754c000 r–p 00028000 08:02 4849730 /lib64/libtinfo.so.5.9
7f7f1754c000-7f7f17551000 rw-p 0002c000 08:02 4849730 /lib64/libtinfo.so.5.9
7f7f17551000-7f7f17552000 rw-p 00000000 00:00 0
7f7f17558000-7f7f176f3000 r-xp 00000000 08:02 4849672 /lib64/libc-2.15.so
7f7f176f3000-7f7f178f3000 —p 0019b000 08:02 4849672 /lib64/libc-2.15.so
7f7f178f3000-7f7f178f7000 r–p 0019b000 08:02 4849672 /lib64/libc-2.15.so
7f7f178f7000-7f7f178f9000 rw-p 0019f000 08:02 4849672 /lib64/libc-2.15.so
7f7f178f9000-7f7f178fd000 rw-p 00000000 00:00 0
7f7f17900000-7f7f17917000 r-xp 00000000 08:02 4849698 /lib64/libpthread-2.15.so
7f7f17917000-7f7f17b16000 —p 00017000 08:02 4849698 /lib64/libpthread-2.15.so
7f7f17b16000-7f7f17b17000 r–p 00016000 08:02 4849698 /lib64/libpthread-2.15.so
7f7f17b17000-7f7f17b18000 rw-p 00017000 08:02 4849698 /lib64/libpthread-2.15.so
7f7f17b18000-7f7f17b1c000 rw-p 00000000 00:00 0
7f7f17b20000-7f7f17b35000 r-xp 00000000 08:02 4849785 /lib64/libgcc_s.so.1
7f7f17b35000-7f7f17d34000 —p 00015000 08:02 4849785 /lib64/libgcc_s.so.1
7f7f17d34000-7f7f17d35000 r–p 00014000 08:02 4849785 /lib64/libgcc_s.so.1
7f7f17d35000-7f7f17d36000 rw-p 00015000 08:02 4849785 /lib64/libgcc_s.so.1
7f7f17d38000-7f7f17e2d000 r-xp 00000000 08:02 4849680 /lib64/libm-2.15.so
7f7f17e2d000-7f7f1802d000 —p 000f5000 08:02 4849680 /lib64/libm-2.15.so
7f7f1802d000-7f7f1802e000 r–p 000f5000 08:02 4849680 /lib64/libm-2.15.so
7f7f1802e000-7f7f1802f000 rw-p 000f6000 08:02 4849680 /lib64/libm-2.15.so
7f7f18030000-7f7f18118000 r-xp 00000000 08:02 1452142 /usr/lib64/libstdc++.so.6.0.17
7f7f18118000-7f7f18318000 —p 000e8000 08:02 1452142 /usr/lib64/libstdc++.so.6.0.17
7f7f18318000-7f7f18320000 r–p 000e8000 08:02 1452142 /usr/lib64/libstdc++.so.6.0.17
7f7f18320000-7f7f18322000 rw-p 000f0000 08:02 1452142 /usr/lib64/libstdc++.so.6.0.17
7f7f18322000-7f7f18337000 rw-p 00000000 00:00 0
7f7f18338000-7f7f1833a000 r-xp 00000000 08:02 4849706 /lib64/libutil-2.15.so
7f7f1833a000-7f7f18539000 —p 00002000 08:02 4849706 /lib64/libutil-2.15.so
7f7f18539000-7f7f1853a000 r–p 00001000 08:02 4849706 /lib64/libutil-2.15.so
7f7f1853a000-7f7f1853b000 rw-p 00002000 08:02 4849706 /lib64/libutil-2.15.so
7f7f18540000-7f7f18555000 r-xp 00000000 08:02 4849682 /lib64/libnsl-2.15.so
7f7f18555000-7f7f18754000 —p 00015000 08:02 4849682 /lib64/libnsl-2.15.so
7f7f18754000-7f7f18755000 r–p 00014000 08:02 4849682 /lib64/libnsl-2.15.so
7f7f18755000-7f7f18756000 rw-p 00015000 08:02 4849682 /lib64/libnsl-2.15.so
7f7f18756000-7f7f18758000 rw-p 00000000 00:00 0
7f7f18758000-7f7f1875b000 r-xp 00000000 08:02 4849678 /lib64/libdl-2.15.so
7f7f1875b000-7f7f1895a000 —p 00003000 08:02 4849678 /lib64/libdl-2.15.so
7f7f1895a000-7f7f1895b000 r–p 00002000 08:02 4849678 /lib64/libdl-2.15.so
7f7f1895b000-7f7f1895c000 rw-p 00003000 08:02 4849678 /lib64/libdl-2.15.so
7f7f18960000-7f7f18aa5000 r-xp 00000000 08:02 2099372 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.1.0.2
7f7f18aa5000-7f7f18ca4000 —p 00145000 08:02 2099372 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.1.0.2
7f7f18ca4000-7f7f18ca9000 r–p 00144000 08:02 2099372 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.1.0.2
7f7f18ca9000-7f7f18cbb000 rw-p 00149000 08:02 2099372 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.1.0.2
7f7f18cbb000-7f7f18cd4000 rw-p 00000000 00:00 0
7f7f18cd8000-7f7f18cf0000 r-xp 00000000 08:02 2099374 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so.1.0.1
7f7f18cf0000-7f7f18ef0000 —p 00018000 08:02 2099374 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so.1.0.1
7f7f18ef0000-7f7f18ef2000 r–p 00018000 08:02 2099374 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so.1.0.1
7f7f18ef2000-7f7f18ef3000 rw-p 0001a000 08:02 2099374 /usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so.1.0.1
7f7f18ef8000-7f7f18f1c000 r-xp 00000000 08:02 4849726 /lib64/libncurses.so.5.9
7f7f18f1c000-7f7f1911b000 —p 00024000 08:02 4849726 /lib64/libncurses.so.5.9
7f7f1911b000-7f7f1911c000 r–p 00023000 08:02 4849726 /lib64/libncurses.so.5.9
7f7f1911c000-7f7f1911d000 rw-p 00024000 08:02 4849726 /lib64/libncurses.so.5.9
7f7f19120000-7f7f1915b000 r-xp 00000000 08:02 4849703 /lib64/libreadline.so.6.2
7f7f1915b000-7f7f1935b000 —p 0003b000 08:02 4849703 /lib64/libreadline.so.6.2
7f7f1935b000-7f7f1935d000 r–p 0003b000 08:02 4849703 /lib64/libreadline.so.6.2
7f7f1935d000-7f7f19363000 rw-p 0003d000 08:02 4849703 /lib64/libreadline.so.6.2
7f7f19363000-7f7f19364000 rw-p 00000000 00:00 0
7f7f19368000-7f7f19389000 r-xp 00000000 08:02 4849942 /lib64/ld-2.15.so
7f7f19460000-7f7f19466000 r-xp 00000000 08:02 4849673 /lib64/libnss_lsass.so.2
7f7f19466000-7f7f19565000 —p 00006000 08:02 4849673 /lib64/libnss_lsass.so.2
7f7f19565000-7f7f19566000 rw-p 00005000 08:02 4849673 /lib64/libnss_lsass.so.2
7f7f1956b000-7f7f19570000 rw-p 00000000 00:00 0
7f7f19587000-7f7f19589000 rw-p 00000000 00:00 0
7f7f19589000-7f7f1958a000 r–p 00021000 08:02 4849942 /lib64/ld-2.15.so
7f7f1958a000-7f7f1958b000 rw-p 00022000 08:02 4849942 /lib64/ld-2.15.so
7f7f1958b000-7f7f1958d000 rw-p 00000000 00:00 0
7f7f1958d000-7f7f19590000 rw-p 00000000 00:00 0
7fff385bd000-7fff385de000 rw-p 00000000 00:00 0 [stack]
7fff38600000-7fff38601000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
[porus01:31587] *** Process received signal ***
[porus01:31587] Signal: Aborted (6)
[porus01:31587] Signal code: (-6)
[porus01:31587] [ 0] /lib64/libpthread.so.0(+0xf140) [0x7f7f1790f140]
[porus01:31587] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x7f7f1758cd25]
[porus01:31587] [ 2] /lib64/libc.so.6(abort+0x148) [0x7f7f1758e1a8]
[porus01:31587] [ 3] /lib64/libc.so.6(+0x72fcb) [0x7f7f175cafcb]
[porus01:31587] [ 4] /lib64/libc.so.6(+0x78b66) [0x7f7f175d0b66]
[porus01:31587] [ 5] /usr/lib64/libstdc++.so.6(_ZNSs6assignERKSs+0x86) [0x7f7f180f0ea6]
[porus01:31587] [ 6] ./mothur(_ZN8Bayesian12readProbFileERSt14basic_ifstreamIcSt11char_traitsIcEES4_SsSs+0xb20) [0x9173e0]
[porus01:31587] [ 7] ./mothur(_ZN8BayesianC1ESsSsSsiiiibb+0x1357) [0x919217]
[porus01:31587] [ 8] ./mothur(_ZN19ClassifySeqsCommand7executeEv+0x4d6) [0x6fd956]
[porus01:31587] [ 9] ./mothur(_ZN11BatchEngine8getInputEv+0x8f5) [0x976415]
[porus01:31587] [10] ./mothur(main+0xcca) [0x4e98ca]
[porus01:31587] [11] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f7f17579455]
[porus01:31587] [12] ./mothur() [0x4ea811]
[porus01:31587] *** End of error message ***
Aborted