mothur

Are my pairwise.seqs results normal?

Hi guys,

I have around 0.8gb fasta file for pairwise.seqs and ran with cpu=12 and allocated memory=12gb. It is now running. I am just wondering how long does it usually take to finish? I also noticed that the .dist file has 0kb, .list has 275mb, .rabund file has 2.6mb and .sabund has 590kb, are these numbers normal? Does my run make sense?

Thank you so much.

Hi,

pairwise.seqs could take a long time to run. Why are you running it instead of align.seqs? How many sequences do you have?

Pat

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