Hi everyone,
I am calculaing some summary statistics using my .shared file which seemingly is straightforward, however when I run the following command:
summary.shared(shared=stability.trim.contigs.good.unique.good.filter.unique.precluster.pick.pick.an.unique_list.0.01.subsample.shared)
I get a table that lists each of my samples twice as shown below. Does anyone know the significance of this?
group nseqs coverage sobs shannon shannon_lci shannon_hci invsimpson invsimpson_lci invsimpson_hci chao chao_lci chao_hci
KD001 2000 0.944906 153.334 3.175896 3.110012 3.241779 13.560986 12.758462 14.471327 832.480266 485.485016 1549.616358
KD002 2000 0.942562 187.449 3.194598 3.104755 3.284442 6.522559 5.93962 7.23241 701.438511 458.723253 1164.732307
KD003 2000 0.949321 143.843 2.786479 2.713075 2.859883 8.4469 7.998692 8.948342 690.56776 411.967491 1263.654698
KD004 2000 0.941105 177.484 2.329781 2.226888 2.432673 2.89744 2.707763 3.115703 589.660098 406.515348 920.154671
KD005 2000 0.944879 169.27 3.37275 3.301921 3.443579 13.401991 12.334399 14.672058 675.827148 432.34824 1147.55707
KD001 0 0.004859 9.706413 0.036908 0.036108 0.037747 0.436298 0.416543 0.458946 301.177603 123.021369 755.048777
KD002 0 0.004872 9.571175 0.049062 0.049323 0.04884 0.334674 0.297145 0.382437 213.643503 95.735969 499.43777
KD003 0 0.004615 9.307865 0.040493 0.039652 0.041367 0.239945 0.222531 0.260297 220.082758 94.18113 530.255122
KD004 0 0.005131 9.926517 0.05476 0.054303 0.055243 0.101826 0.091812 0.113936 131.232622 70.924358 251.489122
KD005 0 0.00481 9.802913 0.03999 0.03959 0.040434 0.597855 0.560268 0.641808 183.570106 85.750477 405.63374