What commands can i use?

Commands in mothur
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Hi
This is the first time in my life I will be using mothur analysis. I have several aligned Raoultell sequences. What commands can be useful in obtaining a heat map or a rarefaction curve?

Thank you in advance for your answer.

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Welcome! It sounds like you need to check out the MiSeq SOP. You might also want to see my minimalR materials for analyzing output from mothur in R

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