[WARNING]: 182190 of your sequences generated alignments that eliminated too many bases,

Hi there, im having trouble figuring out why so many sequences had bases eliminated. I have attached a google doc with the pipeline and the outputs from the corresponding line of input coding which can be found here.

Any advice would be appreciated!


I don’t have access to your google doc. Could you just post the output that mothur put to the screen?


This topic was automatically closed 10 days after the last reply. New replies are no longer allowed.