I’m having several problems with mothur 1.26 Windows 32bit
Using summary.seqs and classify.seqs, it seems to have problems with recognizing the last line (end of file?) in auxilliary files (.names, .tax) leading to
XXX is in your template file and is not in your taxonomy file. Please correct.
XXX is not in your namefile, please correct.
I have no problems using the same commands and files in v1.24.1 (deleted v1.25, but didn’t have any issues as far as I recall)