Dear mothur-community,
we are still working through the SOP. And now are at the point of calculating different alpha-diversity indices. The last command we used is the “summary.single”-command and looked in the resulting ***.groups.ave-std.summary file.
Receiving the following output:
label group method nseqs coverage sobs invsimpson invsimpson_lci invsimpson_hci shannon shannon_lci snip
0.03 FSM-B ave 843801.000000 0.993619 8526.265000 7.824210 7.781387 7.867506 4.414662 4.409967 snip
0.03 SDM-B ave 843801.000000 0.987543 13480.000000 22.228329 22.112835 22.345036 4.723693 4.722382 snip
0.03 FSM-B std 0.000000 0.000021 15.973565 0.004586 0.004552 0.004620 0.000658 0.000660 snip
0.03 SDM-B std 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 snip
What troubles us is the last line. All the values for the standard deviation are 0. Why?
Thank you very much indeed for your input and help.
Regards,