mothur

Sub.sample/remove rare with relative abundance


#1

Hi guys,
is there an option to make subsampling by relative abundance? Is it possible to write “size=0.001”, for example?Or what I have to do to remove the 0.1% of reads in the OTUs?

Number are bogus!

Thank you for your replies.


#2

Subsampling, subsamples all of the samples to the same number of reads one time. You could subsample to 1000 reads and then use filter.shared.

Pat


#3

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