I have an abundance table of samples in rows and genus in columns. I would like to display a network from this table using SparCC but when I try to infer correlations between the numbers via “python SparCC.py …/abundance.txt -i 10 --cor_file=test_cor.txt > sparcc.log” i get an error displayed below:
(Please excuse the misalignment of the columns- rest assured the file is formatted properly and tab-delimited)
acetitomaculum acetivibrio acholeplasma achromobacter AE01 0 0 0 1 AE02 0 0 0 2 AE03 0 0 0 48
IOError: Matrix dimensions must match labels dimensions
Can anyone tell me how I might try to infer a correlations and display a network from such an abundance table?