Is there a way to screen out sequences by their name?
I have outgroups that are undetected until I build the tree. They are non-target sequences that will form their own clusters and create spurious OTUs. I know I can delete them from the fasta file manually and rerun everything, but it would be nice if I could just screen them out with a single command and update the associated files at the same time.
Thanks!
Wendy