Hi! I am a university student and new to using mothur. I need to run align.seqs(fasta=mergedtrim.fasta, reference=silva.bacteria.fasta)
However, this takes too long and ends up timing out.
So I tried to run this command in a batch file.
This is the file contents:
When I run $ ./mothur mothurcommands.txt , I get:
bash: ./mothur: No such file or directory
I feel like everything looks wrong. Please help and thank you!