Hi, I know this question is similar to another old post but I am still struggling! (how to run batch mode?)
I am very new to mothur, and I’ve managed to follow the 16s rRNA SOP, then I noticed there is instructions for a batch mode which (I assume) would be able to complete all the operations from the SOP in one go.
How do you run this command? One comment says to run stability.batch before starting mothur, but what does this mean?
Please could someone explain how to run this to me like I am five, it would be a huge help!
Thank you so much!