mothur

Pre.cluster "could not open x.map" Error


#1

I am using 18S data
I used the command
mothur > pre.cluster(fasta=stability.trim.contigs.good.unique.pick.good.filterunique.fasta, count=stability.trim.contigs.good.unique.pick.good.filter.count_table, diffs=2)

Using 8 processors.

and while some of the groups worked there were a few where there were errors like,
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.18S2-042618-wetland-Leg-OHEPA-F4-R7.map

Then, by the end I got an overall error saying

Processing group 18S2-042618-wetland-Leg-OHEPA-F4-R1:

**** Exceeded maximum allowed command errors, quitting ****
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.18S2-042618-wetland-Leg-OHEPA-F4-R1.map

**** Exceeded maximum allowed command errors, quitting ****
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.count_table

Please help! Thanks!


#2

Could you send your input files to mothur.bugs@gmail.com?


closed #3

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