I am using 18S data
I used the command
mothur > pre.cluster(fasta=stability.trim.contigs.good.unique.pick.good.filterunique.fasta, count=stability.trim.contigs.good.unique.pick.good.filter.count_table, diffs=2)
Using 8 processors.
and while some of the groups worked there were a few where there were errors like,
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.18S2-042618-wetland-Leg-OHEPA-F4-R7.map
Then, by the end I got an overall error saying
Processing group 18S2-042618-wetland-Leg-OHEPA-F4-R1:
**** Exceeded maximum allowed command errors, quitting ****
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.18S2-042618-wetland-Leg-OHEPA-F4-R1.map
**** Exceeded maximum allowed command errors, quitting ****
[ERROR]: Could not open stability.trim.contigs.good.unique.pick.good.filter.unique.precluster.count_table
Please help! Thanks!