Plotting Unifrac matrix generated by Mothur

Kumari_Richa · May 20, 2015, 1:35pm

Hi,

I performed UniFrac using mothur but not able to plot it, since I lack knowledge of R. Since I am at the end of my thesis, I do not have enough time learn R. Can anyone please suggest me how can I plot the generated unifrac matrix? If In R, Could anyone please forward me the scripts ?

Looking forward and sincere thanks in advance

pschloss · May 25, 2015, 2:37pm

People rarely want to plot a distance matrix. Usually, they want to use pcoa or nmds to build the input files for ordinations or tree.shared to build a dendrogram. If you can give us some more details, we can go from there.

Pat

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Plotting Unifrac matrix generated by Mothur

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