A new version of Silva full database was released (https://www.arb-silva.de/documentation/release-119/). Is that possible to have it formatted for Mothur? and not only the 16S sequences but also the 18S and the LSU sequences?
I am about to start a new analysis and it would be great to have this new updated database, if possible.
I’ve posted an updated set of SILVA reference files…
Thank you Pat! I already noticed that yesterday and downloaded it. And is incredible big!! hope to be able to use it without crashing the computer
Is that possible to have bacteria, archaea and eukaryotes in separate files as with the previous version to reduce the size when weÂ´re only interested in one type of organism? Or that is not possible with this new version?
You can pull it down and run get.lineage
Thank you Pat. Should I split also the reference alignment?? sorry but I am a bit lost with this new huge database and as it seems that the processing time will be long, I want to do things right from the beginning. :roll:
See the end of this for some ideas on how to use the database…
You can split the database if you want using get.lineage