Is there a way for me to run my analysis using COI reference sequence like MIDORI (http://reference-midori.info/download.php#)?
I tried pcr.seq and align.seq command but it says that my sequences are not aligned.
I also tried going directly to pre.cluster without aligning but encountered problem in dist.seq. So I am using pairwise.dist but it take forever to run.
Please guide me on how to proceed with my analysis.