make.contigs how to ignore empty files?

Hi there,

after giving the command

It stopped at a point en sent an error:
[ERROR]: …/sample_R1_001.fastq is blank Please correct
Segmentation fault

Is there a a way to add into the command something so it ignores empty file and continues?..but that it does keep track of the empty files ignored?



It normally does ignore blank fastq files. Is that the actual error message or have you edited it? It seems weird that it would have 3 ‘.’ characters. Can you also post the first several lines of filelist.files?