mothur

LEfSe on familiy level?


#1

Hello,

is it possible to use the lefse implementation of mothur on family level instead of OTU level? Or is there an alternative to compare if famalies in two grpups have changed?

Thanks


#2

Sure - you would use the phylotype command and then generate a shared file. You could use that shared file as input to lefse. This is kind of outlined towards the end of the MiSeq SOP page.

pat


closed #3

This topic was automatically closed 10 days after the last reply. New replies are no longer allowed.