Hey!
My lab recently received Ion torrent data that we are going to analyze using Mothur. We received fastq files from them with the barcodes removed but not the primers. I am unfamiliar with Ion torrent and have only done 454 anaylsis in the past. I used the command fastq.info to generate fasta files and qual files and did a summary seqs and my samples seem to have a good number of sequences per sample. I just do not know where to go next. I do not have a .flow file (nor do I know how to make one) in order to continue with the ion torrent protocol on the wiki.