Include output directory in make.file

Feature requests
1

Hi,

It’d be cool to have an argument to set the output directory/path in make.file function. It happens to me quite often, fastq files are located in a directory I do not want to touch (I want to have only fastq files there).

Thanks

2

Hi,

Have you tried the outputdir argument? All of the command will take this argument so you can specify where you want the data to go. If I make a directory in my working directory called test, the following will put the output file into test…

make.file(inputdir=., outputdir=test, type=fastq)

Pat

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