I hope my message finds you well and everything is going fine, Currently, I am working in the field of metagenomics. I want to use MOTHUR software for analysis of the metagenomic data and comparing microbial communities. Can anyone help me to know how to use MOTHUR software? I have gone through the MiSeq SOP given on the wiki website but it is very difficult to understand it. Does anyone know any other Easy method of understanding it? and what kind of other files I have to download with it?
Welcome to the mothur community! All of the data files you should need will be linked within the MiSeq SOP. Do you have specific questions for things that you find confusing?