Hi, i’m new to microbiome analyses. I’ve got 4 output files from mothur:
stability.an.0.03.subsample.groups
stability.an.0.03.subsample
stability.an.cons.tax
stability.an.cons
I’d like to know how can I get the unique number of OTUs in R from these files as well as their phyla and classes. Do I have to convert these files in anyway? Anyone know the codes to run these files in R?
Thank you!
I think you have “hide file extensions” turned on in your file browser because those aren’t the correct extensions. (this is an annoying default in both window and mac).