I’m struggling with an issue of my group names not being maintained. All I can think is that somehow my group names have an issue with the format? Example below:
_S010396.2 _S010396.2_R1.fastq _S010396.2_R2.fastq
_S010399.1 _S010399.1_R1.fastq _S010399.1_R2.fastq
_S010401.2 _S010401.2_R1.fastq _S010401.2_R2.fastq
When I get the the make.shared command, I get this error:
count file does not have group info in mothur
I have tried various solutions I have found on the forum, but nothing seems to have worked yet.