Hi,
I follow the the wiki page for mothur 1.13 installation in linux 64bit: http://www.mothur.org/wiki/Installation
I edit the makefile, but there is no such line as:
CC_OPTIONS = -O3
do I need only change the CXXFLAGS line ?
it doesn’t really clear what do I need to change there for version 1.13
Thanks.
Yes, you want CXXFLAGS. Sorry for the confusion, it seems we need to update the installation wiki page, :oops: . FYI, we are planning on releasing version 1.14.0 later today, if you want to wait and grab the latest version.
Version 1.14.0 has a few more modifications to the makefile. I have made the modifications to the makefile you will need to make in the new version below. You may also want to set the default directory, and set USEREADLINE ?= no if you do not have the readline libraries installed. I will work on updating the wiki installation instructions soon.
CXXFLAGS += -O3
64BIT_VERSION ?= yes
ifeq ($(strip $(64BIT_VERSION)),yes) #if you are using centos uncomment the following lines #CXX = g++44
#if you are a mac user use the following line #TARGET_ARCH += -arch x86_64
#if you are a linux user use the following line
CXXFLAGS += -mtune=native -march=native -m64
CXXFLAGS += -DBIT_VERSION
endif
MOTHUR_FILES ="“Enter_your_default_path_here”"
RELEASE_DATE = "“10/26/2010"”
VERSION = "“1.14.0"”