Hi!
I am trying to understand the differences between threshold and cutoff …(sorry I am having trouble understanding the definitions on the website…)
For example in my last.0.03.cons.taxonomy I have:
Otu00004 84236 Bacteria(100);Bacteroidetes(100);Flavobacteriia(100);Flavobacteriales(100);Flavobacteriaceae(100);Polaribacter_4(52);
So my understanding is that the confidence interval of this Otu to belong to Polaribacter is only of 52% ?
So if I wanted to remove such a low confidence interval I should use cutoff=80?
I added this on the code and it did not change anything …i tried threshold =80 and no difference either…
I would like in this instance not to get Polaribacter since a 52% confidence interval is low (?)
Thanks