I am receiving error when chimera.vsearch to remove chimeric sequences ,
I tried even dereplicate=t also , please help to sot it out
regards
SAbitha
chimera.vsearch(fasta=stability.trim.contigs.good.unique.good.filter.unique.precluster.fasta, count=stability.trim.contigs.good.unique.good.filter.unique.precluster.count_table, dereplicate=f)
Using 128 processors.
Unable to open /home/wia/vsearch. Trying input directory /home/wia/mothur/vsearch.
Unable to open /home/wia/mothur/vsearch. Trying default /home/wia/vsearch.
Unable to open /home/wia/vsearch. Trying mothur's executable location /home/wia/vsearch.
Unable to open /home/wia/vsearch. Trying mothur's tools location vsearch.
Checking sequences from /home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.fasta ...
/******************************************/
Running command: split.groups(groups=SRR12264494-SRR12264495-SRR12264496-SRR12264497-SRR12264498-SRR12264499-SRR12264500-SRR12264501-SRR12264502-SRR12264503-SRR12264504-SRR12264506-SRR12264507-SRR12264508-SRR12264509-SRR12264510-SRR12264511-SRR12264512-SRR12264513-SRR12264514-SRR12264515-SRR12264518-SRR12264519-SRR12264520-SRR12264521-SRR12264523-SRR12264524-SRR12264525-SRR12264526-SRR12264527-SRR12264528-SRR12264529-SRR12264530-SRR12264531-SRR12264532-SRR12264533-SRR12264534-SRR12264535-SRR12264536-SRR12264537-SRR12264538-SRR12264539-SRR12264540-SRR12264541-SRR12264542-SRR12264543, fasta=/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.fasta, count=/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.count_table)
Using 128 processors.
Reducing processors to 46.
/******************************************/
Selecting sequences for group SRR12264495
/******************************************/
Selecting sequences for group SRR12264525
/******************************************/
Selecting sequences for group SRR12264524
/******************************************/
Selecting sequences for group SRR12264521
/******************************************/
Selecting sequences for group SRR12264504
/******************************************/
Selecting sequences for group SRR12264540
/******************************************/
Selecting sequences for group SRR12264528
/******************************************/
Selecting sequences for group SRR12264532
/******************************************/
Selecting sequences for group SRR12264527
/******************************************/
Selecting sequences for group SRR12264507
/******************************************/
Selecting sequences for group SRR12264523
/******************************************/
Selecting sequences for group SRR12264497
/******************************************/
Selecting sequences for group SRR12264530
/******************************************/
Selecting sequences for group SRR12264526
/******************************************/
Selecting sequences for group SRR12264514
/******************************************/
Selecting sequences for group SRR12264500
/******************************************/
Selecting sequences for group SRR12264543
/******************************************/
Selecting sequences for group SRR12264541
/******************************************/
Selecting sequences for group SRR12264501
/******************************************/
Selecting sequences for group SRR12264496
/******************************************/
Selecting sequences for group SRR12264539
/******************************************/
Selecting sequences for group SRR12264509
/******************************************/
Selecting sequences for group SRR12264542
/******************************************/
Selecting sequences for group SRR12264519
/******************************************/
Selecting sequences for group SRR12264510
/******************************************/
Selecting sequences for group SRR12264512
/******************************************/
Selecting sequences for group SRR12264520
/******************************************/
Selecting sequences for group SRR12264508
/******************************************/
Selecting sequences for group SRR12264511
/******************************************/
Selecting sequences for group SRR12264515
/******************************************/
Selecting sequences for group SRR12264502
/******************************************/
Selecting sequences for group SRR12264494
/******************************************/
Selecting sequences for group SRR12264535
/******************************************/
Selecting sequences for group SRR12264503
/******************************************/
Selecting sequences for group SRR12264499
/******************************************/
Selecting sequences for group SRR12264534
/******************************************/
Selecting sequences for group SRR12264529
/******************************************/
Selecting sequences for group SRR12264506
/******************************************/
Selecting sequences for group SRR12264537
/******************************************/
Selecting sequences for group SRR12264538
/******************************************/
Selecting sequences for group SRR12264533
/******************************************/
Selecting sequences for group SRR12264518
/******************************************/
Selecting sequences for group SRR12264531
/******************************************/
Selecting sequences for group SRR12264536
/******************************************/
Selecting sequences for group SRR12264498
/******************************************/
Selecting sequences for group SRR12264513
Selected 20 sequences from your fasta file.
/******************************************/
Selected 213 sequences from your fasta file.
/******************************************/
Selected 312 sequences from your fasta file.
/******************************************/
Selected 91 sequences from your fasta file.
/******************************************/
Selected 2984 sequences from your fasta file.
/******************************************/
Selected 1453 sequences from your fasta file.
/******************************************/
Selected 11 sequences from your fasta file.
/******************************************/
Selected 855 sequences from your fasta file.
/******************************************/
Selected 975 sequences from your fasta file.
/******************************************/
Selected 161 sequences from your fasta file.
/******************************************/
Selected 247 sequences from your fasta file.
/******************************************/
Selected 1275 sequences from your fasta file.
/******************************************/
Selected 1302 sequences from your fasta file.
/******************************************/
Selected 155 sequences from your fasta file.
/******************************************/
Selected 1378 sequences from your fasta file.
/******************************************/
Selected 685 sequences from your fasta file.
/******************************************/
Selected 27 sequences from your fasta file.
/******************************************/
Selected 109 sequences from your fasta file.
/******************************************/
Selected 1313 sequences from your fasta file.
/******************************************/
Selected 613 sequences from your fasta file.
/******************************************/
Selected 2022 sequences from your fasta file.
Selected 554 sequences from your fasta file.
/******************************************/
/******************************************/
Selected 1229 sequences from your fasta file.
/******************************************/
Selected 114 sequences from your fasta file.
/******************************************/
Selected 2968 sequences from your fasta file.
/******************************************/
Selected 4018 sequences from your fasta file.
/******************************************/
Selected 177 sequences from your fasta file.
/******************************************/
Selected 3354 sequences from your fasta file.
/******************************************/
Selected 445 sequences from your fasta file.
/******************************************/
Selected 1067 sequences from your fasta file.
/******************************************/
Selected 281 sequences from your fasta file.
/******************************************/
Selected 4360 sequences from your fasta file.
/******************************************/
Selected 438 sequences from your fasta file.
/******************************************/
Selected 752 sequences from your fasta file.
/******************************************/
Selected 1641 sequences from your fasta file.
/******************************************/
Selected 1760 sequences from your fasta file.
Selected 2005 sequences from your fasta file.
/******************************************/
/******************************************/
Selected 2175 sequences from your fasta file.
/******************************************/
Selected 1980 sequences from your fasta file.
/******************************************/
Selected 1640 sequences from your fasta file.
/******************************************/
Selected 217 sequences from your fasta file.
/******************************************/
Selected 3260 sequences from your fasta file.
/******************************************/
Selected 2902 sequences from your fasta file.
/******************************************/
Selected 252 sequences from your fasta file.
/******************************************/
Selected 649 sequences from your fasta file.
/******************************************/
Selected 2431 sequences from your fasta file.
/******************************************/
Output File Names:
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264494.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264494.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264495.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264495.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264496.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264496.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264497.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264497.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264498.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264498.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264499.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264499.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264500.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264500.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264501.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264501.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264502.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264502.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264503.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264503.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264504.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264504.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264506.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264506.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264507.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264507.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264508.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264508.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264509.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264509.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264510.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264510.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264511.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264511.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264512.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264512.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264513.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264513.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264514.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264514.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264515.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264515.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264518.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264518.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264519.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264519.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264520.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264520.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264521.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264521.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264523.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264523.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264524.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264524.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264525.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264525.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264526.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264526.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264527.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264527.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264528.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264528.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264529.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264529.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264530.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264530.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264531.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264531.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264532.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264532.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264533.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264533.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264534.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264534.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264535.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264535.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264536.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264536.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264537.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264537.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264538.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264538.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264539.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264539.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264540.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264540.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264541.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264541.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264542.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264542.fasta
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264543.count_table
/home/wia/mothur/stability.trim.contigs.good.unique.good.filter.unique.precluster.SRR12264543.fasta
/******************************************/
Reducing processors to 46.
sh: vsearch: command not found
sh: vsearch: command not found
Error in reading your fastafile, at position -1. Blank name.
Error in reading your fastafile, at position -1. Blank name.
sh: vsearch: command not found
sh: vsearch: command not found
It took 1 secs to check 0 sequences.