Hi,
I’m trying to convert a BIOM file to a shared file, but get multiple error messages. Can you please help?:
Windows version
Running 64Bit Version
mothur v.1.39.5
Last updated: 3/20/2017
by
Patrick D. Schloss
Department of Microbiology & Immunology
University of Michigan
http://www.mothur.org
When using, please cite:
Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
Distributed under the GNU General Public License
Type ‘help()’ for information on the commands that are available
For questions and analysis support, please visit our forum at https://www.mothur.org/forum
Type ‘quit()’ to exit program
Interactive Mode
mothur > biom.info(biom=ag-fecal.biom) [ERROR]: you file does not have a type provided. [ERROR]: you file does not have a matrix_type provided. [ERROR]: you file does not have a matrix_element_type provided. [ERROR]: you file does not have a rows provided. [ERROR]: you file does not have a columns provided. [ERROR]: you file does not have a shape provided. [ERROR]: you file does not have a data provided.
It took 0 create mothur files from your biom file.
Output File Names: ag-fecal.userLabel.shared