Has anyone had experience using .biom files from mothur with phyloseq?
I created a .biome file using a .shared and .constaxonomy files. The .biome file wouldn’t upload successful into shiny-phyloseq and phyloseq wouldn’t import it either. Here is the error output: Error in validObject(.Object) :
invalid class “otu_table” object: superclass “vector_OR_factor” not defined in the environment of the object’s class
I tried converting the mothur .biom file to newer json and hdf5 formats, and no luck there either.