Hi,
I get the below warning when I try to align my contigs to the SILVA bacterial reference database (silva.bacteria.fasta/silva.v4.fasta).
“[WARNING]: 249594 of your sequences generated alignments that eliminated too many bases, a list is provided in F:\Normal_Mare_Project\Data_2\stability.trim.contigs.good.unique.flip.accnos.
[NOTE]: 121800 of your sequences were reversed to produce a better alignment.”
Would greatly appreciate if someone can help me with this.
Thank you.