sub.sample does not write new name file


I have some trouble with sub.sample in the current version of mothur, v.1.21.1: I can’t get it to write a new name file when used with a fasta and a name file as input.



Till -

sub.sample creates a new fasta file that has the duplicate sequences included in it so a names file isn’t needed. We’re working on outputting a unique fasta and names file from this command.


This will be part of version 1.22.0.