Good Morning,
I was wonderig if it was possible to run the same analysis on the same time for more .sff file? Like a command with who run the same operation for 2 or more file?
I’m using mothur on unix.
Thank you for your attention
The denoising command in mothur, shhh.flows, can take multiple sff files as inputs using the ‘file’ parameter. There’s also the sff.multiple command which can add in primer/barcode trimming automatically.
For both of these commands you just need to specify how many processors to use and mothur will queue the sff files over that many processes.